PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022872-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 622aa    MW: 67001.6 Da    PI: 6.0544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022872-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30260319159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  NNU_022872-RA 260 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 319
                    58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-32245321IPR003657WRKY domain
SuperFamilySSF1182904.05E-27253321IPR003657WRKY domain
PROSITE profilePS5081128.461255321IPR003657WRKY domain
SMARTSM007742.2E-36260320IPR003657WRKY domain
PfamPF031069.6E-27261319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MDATIRSCLG GPIKDEKRAD QSCGDDDGSR ELEKLCDGRQ VHDDNGSKPS SPNQKETTIS  60
KQVSTETSPM QNILRAPSSI KKDQEEKLES AKAEMGEVRE ENERLKMVLA RIVKDYQSLQ  120
TKFFGIAQQE AATQFADTAP KDQEIEEPEL VSLSLGRIST EPKKEEKNSN SSKCKEDDHE  180
GLSLGLDCKF EVSNPGSTER ASNPSPENSL EEPKEEEAGE TWPPSKFLKT MRSGDDEVSQ  240
QTQVKKARVS VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP ACPVRKQVQR  300
CAEDMSILIT TYEGTHNHPL PVSATAMAST TSAAASMLMS GSISSRPTLA GASLGPLATN  360
TTSAADLHGL NFNLADNTRA RPSFYLPSSS VSSSTTYPTI TLDLTAPPSS SASSSSFQLN  420
RLSTSNFPAQ RYSPTSFNFS STESNSQPTW GNGYLSYGTQ PYNKNQQQLG SLSLGRQPQE  480
SFYQAYMQKN NPAAPSQQSL TESIAAATKA ITSDPSFRSA LAAAIASIVG SGNSGTTTQG  540
NQGSGENFGQ NLKWGEQFSA VPPYTSTTPN GNGCASSFLN RSASSNTQQG SLMFLPPALP  600
FSTSKSASAS PVDNRDHINI NX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21247321174WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242382.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A061G4200.0A0A061G420_THECC; WRKY DNA-binding protein 72, putative
STRINGVIT_17s0000g05810.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-80WRKY DNA-binding protein 72